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Setup RNA-Seq Pipeline from scratch: fastq (reads) to counts | Step-by-Step Tutorial

YouTubeBioinformagician

Setup RNA-Seq Pipeline from scratch: fastq (reads) to counts | Step-by-Step Tutorial

This is a detailed workflow tutorial of how to process bulk RNA-Seq reads (fastq) and generate counts matrix which can be used for various downstream analysis. In this video, I walk through setting up a pipeline in bash (linux) and perform steps to process RNA-Seq data including - • Quality control (fastQC) • Trimming (Trimmomatic ...

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Jump to key moments of Python to Read Fastq File

From 00:18Overview of FastQ File

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From 00:28How to Read a FastQ File

fastq file format

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From 03:30Quality Control Using FastQC

Setup RNA-Seq Pipeline from scratch: fastq (reads) to counts | Step-by-Step …

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From 04:47Plotting Average Quality Score as a Function of Position in Reads

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From 01:03Reading and Parsing FASTQ File

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